NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181424_10128430

Scaffold Ga0181424_10128430


Overview

Basic Information
Taxon OID3300017786 Open in IMG/M
Scaffold IDGa0181424_10128430 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1092
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026158Metagenome199Y
F047368Metagenome150N
F052258Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0181424_101284303F052258N/AMKKTKEQIVNEHKLVNSEREAEAAMILFACHLGGVILILLAIAMG
Ga0181424_101284304F026158AGAAGVHYGDILELNPTIEFKMRDATAPRICSAEESKLSAVRCMEGFRDKMEMLMKAGDILDHCTSGRSTSEEAAEVRARSLNIWQETGCTIAEAADRGGANRGSFRRWLIKEGHHTPKSK
Ga0181424_101284305F047368AGGAMPNECGAIKHAHTEDEALKHLAVGNKSKGYKLKRSGVSIEVI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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