NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181355_1068303

Scaffold Ga0181355_1068303


Overview

Basic Information
Taxon OID3300017785 Open in IMG/M
Scaffold IDGa0181355_1068303 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1495
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001897Metagenome / Metatranscriptome620Y
F032155Metagenome / Metatranscriptome180Y
F086582Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0181355_10683031F032155N/AKVSVGEWTAVGGFVIAILAAVYSSMRIIIRAVMSELLPNGGSSMKDQISRIEARLDYLYTQLIEKQSNTP
Ga0181355_10683033F001897AGGCGGMATFMDNYEGNKDRNNRWIATYPQGRIEAYVVEFNAKDGYVLVQAKGWRNQTEIEPADIDYAYGFIAAYPDRMKRWFVEDTITSAKMRVMANLLGGTEKATAEVMALVKSETPAADYDYWTTKHGDVPSYETSGEAEAAGTPSFGSSEDAWVPNAVPTCSHGSMRWNQSKPDAAKSWGGYFCSEKVKAMQCTPRWYVLRSTGTWEPQV
Ga0181355_10683035F086582N/AMDRIEEVQCMIAAIQHCHDKSADHSSRIVKDISWFAYVAQMGESMAAEMVVAKRLGYDYTPGITWDKSKADV
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