NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181355_1042237

Scaffold Ga0181355_1042237


Overview

Basic Information
Taxon OID3300017785 Open in IMG/M
Scaffold IDGa0181355_1042237 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1951
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002738Metagenome / Metatranscriptome533Y
F015987Metagenome / Metatranscriptome250Y
F016142Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0181355_10422371F015987N/AMTQITQAKLKDLTVIKLYEHYNALEKSLPLLTPESQELAKAELESCAHLRSEKIDRIYYAMASHEDALERIKKEGDLITQSKRHHESQLRSLKGLLNYLRRVLPLDSNK
Ga0181355_10422372F002738GGAMSIDTYGLSSEQYEEFFEDNVKFAAKLYVKACQILKDNGAGAIDFKTTLDLYQEAIYGTSDDCRRYQKSNNPEAIKDNDIFGLSPSREEMMAEIQSVNAKVEALTDYLAELVKVTTNGLEGIAENLVD
Ga0181355_10422375F016142N/AYVLFKGWNYSHALGHLTSNAKLQAHWADKFIHVSDTNKVLHLLQSDQTDIGHLVAPDGLRIPNRPIDFDSDMEADQSAPVVDKPWCSCGSYQRQLSNVSDFASEIEGFKPWCIHMTWFNKYRELLCKRTEARNASPSGTPEKCVSWWYAPPADHISNGRFVLLYTNSGAQAPLSHWRTYKPKDVFTQHDAWDLFFNMCDVGYVPFPGTALPQLKSAVKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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