Scaffold Ga0181380_1039736

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181380_1039736

Scaffold Ga0181380_1039736

Overview

Basic Information
Taxon OID	3300017782 Open in IMG/M
Scaffold ID	Ga0181380_1039736 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1707
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004952	Metagenome	417	Y
F020173	Metagenome	225	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181380_10397364	F004952	GGAG	MNLTHTHEFLITHITDSGTGFAVRTDNGESVHISPRLLQQAHANLDDICTGIIVQNAVEEQRERTPWVAAYVQERRAARDVLAATYGLDDSERFAKDEDGNTVVVAEVGEPKPKSVDWADVQRKILAMLQSADVTYCETADIADVVGVEPRKLSQHLENMHSRGEICRAHVNQRANQQRATLVLWSINADVYK
Ga0181380_10397365	F020173	GGA	MICATCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDF

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