| Basic Information | |
|---|---|
| Taxon OID | 3300017780 Open in IMG/M |
| Scaffold ID | Ga0181346_1039948 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1923 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009265 | Metagenome / Metatranscriptome | 320 | Y |
| F009526 | Metagenome / Metatranscriptome | 316 | N |
| F009746 | Metagenome / Metatranscriptome | 313 | N |
| F029096 | Metagenome | 189 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181346_10399482 | F029096 | GAG | MVMAEARQTIKIQPDLRDFRGLLKALNQMDKEANQELKDDVASISEWTAGQMRQAAYAHPYFPRQAAIIAPTIRPNKDRIPNVTIGGSKGRASGGANAGQLLFGNEFGGERNARGSQSAFPNGGFRFPPRSDRVGRGNAGYWIFPTLKAAQPEITQRWKTAVMKVLSNWDKAGVM |
| Ga0181346_10399483 | F009265 | AGG | MKYEVTTKQGNNYIVSDDSAWLWVEVERELGYTVSQAAEKMSQGSLDVITCMLYKAAKAQGHTKLPSQQAWVINEFETFDVVSEPDPKENLQTASSE |
| Ga0181346_10399484 | F009526 | AGG | MTATYITGRSLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVEMYLDDSSSAGIISALWDAANSAPDTTLSFSFDVNGDTFTGSVFPAYPTVGGAATDVLTTSLSFIVNDGSVGRA |
| Ga0181346_10399485 | F009746 | N/A | TTLAAAGRVVYAWPNENITPPAIALVPGSPYITVSAIGGARCNVRFDITVIVNAADNQAALANIETLIFSVTDLLSNNISFLSGWSQPTVQQIGNADMLISQLNIEMVTTN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |