NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181349_1018584

Scaffold Ga0181349_1018584


Overview

Basic Information
Taxon OID3300017778 Open in IMG/M
Scaffold IDGa0181349_1018584 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2848
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016962Metagenome / Metatranscriptome243Y
F047018Metagenome / Metatranscriptome150Y
F074861Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0181349_10185841F074861N/ATTYDCNVLVQLAGDSCWDCELEAVTVTSIHIHEQWWDELDGDSSIHITVCYNVNGDTEYEDSWRLYTDTGFADAISTLLGTEVMFTEQGMQEDGYASMEL
Ga0181349_10185843F016962N/AMDMTELIIATLLGIFIGWQAAKRVHLQGFRELLRALKVTEEDLLRAMIKIQSSEWQLDAPEGTKDETVVDVKLEQVGTAIYAYRKSDHQFLAQGTDADSLIARLNENLTPCKVVVAQEDGADLLQKSHT
Ga0181349_10185848F047018AGGAGMLKLIGIAAVVYIGWITGLIQATLMITAGVLIAVA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.