NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181357_1076558

Scaffold Ga0181357_1076558


Overview

Basic Information
Taxon OID3300017777 Open in IMG/M
Scaffold IDGa0181357_1076558 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1283
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)108
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F006697Metagenome / Metatranscriptome366Y
F031077Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0181357_10765581F031077N/AGANGNQFQVNEALLVEKIGFFIPTAADGIAYNGISNVNASVKFDLVIGNKTVLKDVSCETGGEQAFYNDGTIASSVIDLEGVGILIPPQVEYYVIAKSFNAQTRDAGSIRLGCYLFGTGALLNFNTTI
Ga0181357_10765582F006697N/AMANQVQKVAYVDSKLGVSLPGQQTTRVIYDSINTTAGQTFFQFFTNFAGKNEFQTNLTTNKLDSAESMVIKSVQIIMNSAVSNLADHLNLNITVGNQVVLKDFDPSFNCSSRGLSFDRLHSGFNSTTNLEVRLLTEIVIPPQVNFKAELQISNALLAANDDVTIILKGYGRIFSAGNSF
Ga0181357_10765583F000710N/AMASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHELGASTGTGISTGFPAFIPFPRALTGQDTILLRV
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