NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181357_1066362

Scaffold Ga0181357_1066362


Overview

Basic Information
Taxon OID3300017777 Open in IMG/M
Scaffold IDGa0181357_1066362 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1391
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)108
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024099Metagenome / Metatranscriptome207Y
F043897Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0181357_10663622F024099N/AMENEIKWTDLVDIEVDGGTSTVAYVTSAFSKVLNRELTEDECEFVTNKFAREMYNLEFERKY
Ga0181357_10663625F043897N/AISAESNMSSMITLSFEEITEANAWFDMVSAQFDEVEAAWDRLVEYVDNI

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