NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187217_1113156

Scaffold Ga0187217_1113156


Overview

Basic Information
Taxon OID3300017770 Open in IMG/M
Scaffold IDGa0187217_1113156 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)919
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066694Metagenome126Y
F070308Metagenome123Y
F084111Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0187217_11131561F084111GAGMRHDWDPNDQQNWEMNCEAERTAKVRPLRDYNGDILNTGDLVWLTDHRPMELAIVLGESHRENALVRLVKGGYDFTV
Ga0187217_11131562F070308GGAGGLKVGNLVKRRDPSWDTVDQLGLVISMETVEYSPKVAKVQWLGGDYPSFMYRANDLILISEAQ
Ga0187217_11131563F066694GGAGGLKADLGVRPGDLVKHNSYKDLLGIVVEINLNYAGTPVAVAWTGRNPYGFGNSSIHHPDRLEVIRESR
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