| Basic Information | |
|---|---|
| Taxon OID | 3300017766 Open in IMG/M |
| Scaffold ID | Ga0181343_1088225 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 886 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002764 | Metagenome | 531 | Y |
| F011742 | Metagenome | 287 | N |
| F020138 | Metagenome | 225 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181343_10882251 | F002764 | GAGG | LSPEDEAFEELSRRQGDWGLQGSRKHQIMRYAENNARNEVIEEVAKELDQFTGAFGRDTVQSFA |
| Ga0181343_10882252 | F011742 | GGA | MTTIEFVPFEWVDDDFNPEIDRIEVDYQWHEADDSVGLISYCEKTVKWMRFNLQIKDITDELSYADLAYLKHEIQRNDEDIGF |
| Ga0181343_10882254 | F020138 | AGG | MNQQQTNRLMAFWQDVEAHKAPTLSSPESALNILKSIALDALLAAQDIEQIGVNDETK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |