NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181356_1137230

Scaffold Ga0181356_1137230


Overview

Basic Information
Taxon OID3300017761 Open in IMG/M
Scaffold IDGa0181356_1137230 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)767
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F003182Metagenome / Metatranscriptome502Y

Sequences

Protein IDFamilyRBSSequence
Ga0181356_11372301F000403N/AMTAKLLCNGVLVEEYKIEQCDKCSQLRRLDQFGYQKGYDRTENIIWFCGDCR
Ga0181356_11372302F000903AGGAGGMLAAISHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYDYEPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVTGNTPKMHIVGWMPVAVAKRPRYKNTSQNNWTVPQINLQPIETLVRSNYAHPVI
Ga0181356_11372303F003182AGGAGMHILLFDCAICKKLYGKPKQRFGLKKGAELTEHEWFAQCMGCGTFGIKIV
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