NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181409_1006881

Scaffold Ga0181409_1006881


Overview

Basic Information
Taxon OID3300017758 Open in IMG/M
Scaffold IDGa0181409_1006881 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3919
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011405Metagenome / Metatranscriptome291Y
F022080Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0181409_10068811F022080N/AMIKETHIGLVRMNESKTELYGVQYMLSKWDRNLGDTLNIDGTKWLVGIIGDTKNVVISALNEIVKKHNSIINKKNYQKKKEEKCIMNNILKNVMKDLNL
Ga0181409_10068812F011405N/AMKVLMKPKVKKPWSKEMYDYNDKVADLMKNNITKSIVKYQNDFDKLNELMELCGGIKYGDGYTIDDLYRDVHDEVDNVQNYWLSEEYPYSVSKGLVDDVPYKFVGYDK
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