NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181420_1007138

Scaffold Ga0181420_1007138


Overview

Basic Information
Taxon OID3300017757 Open in IMG/M
Scaffold IDGa0181420_1007138 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3882
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074050Metagenome / Metatranscriptome120Y
F077815Metagenome / Metatranscriptome117Y
F083264Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0181420_10071381F083264N/AKALKAKRADLKLGKDTFKDARAWKRANLDRYRDIMNARVGTRDAVDAMVAKIVKMANEAVAEGMELVRTGKYDDLLTTVNGADVPMNSVTSAMTRALRSYAEYIRYDNQAQKDKESEWAGTYNEKGAKETAGYIKQILNAFESGNANLIGRY
Ga0181420_10071387F077815N/AMQNNDLKYRLKQIIREEITLALKEDSYKFGKLADPKKMDPNDPMVKVTGFASMNRSSIRSQIVDRLSGALATAKDAARGGTESYQAYKQLQDLISDAGILYKLIGAELDTANALEATRLKGGRRTIPIPKQ
Ga0181420_10071388F074050N/AMKRSDIKHIVKEEITNFLKTEKAKAPAVTKGTVTDNARLTMIMNSLGKRAKGSFQKRKVVSQVIMALASSLAITPTEVLRAYMDYKKDAKGDASAKIKKDNK
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