NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181382_1015356

Scaffold Ga0181382_1015356


Overview

Basic Information
Taxon OID3300017756 Open in IMG/M
Scaffold IDGa0181382_1015356 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2496
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005279Metagenome406Y
F037293Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0181382_10153561F037293AGGMIGKHFVSKCIDSRTINDPWPHQYIEDTLPQEEFNKLKEQCRNINVPNDRLVHIFPKDFADHNIKFYDQIHDISKNLLDNAKELCNQYPNHRWFNDLAVNCHISVTPPLPYKFYIHMEGLEKIWSSVTYITPEINVGTKMYTHQDEKAFVKEAEWKPNNTFIFCGQQNKTWHSYESDQTQQRITLNLFLVNGKSKI
Ga0181382_10153564F005279N/AETSISTTRYDQLPMGNTISEIQITTVMAGRHKERMLEWIDKLGLIVVQSEIKPFGPGTRRYMVGKHVEEPTHNAYQLPSGRWASTHGVQEWLTPAPLHGPALEKWLTEYAKKHS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.