NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1002659

Scaffold Ga0181344_1002659


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1002659 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6298
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F014605Metagenome / Metatranscriptome261N
F068589Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100265912F001775N/AMEDKERIKIASLSFMIGVVLAFIVFPKPKYEEIYKFTTKVKTDTIYSRVVDTVYISKNKIKTEFLRDTVLIDFKPKISQFNASFPFEHGSTKVSGEVLGEVLKMTATSDYNIPVVTNTITNTETRTIIQKPKGIYLGGVVSSKMELGAKVAYLDNKYLFEYQYQPFQKVHQIGVSKKLF
Ga0181344_10026592F068589N/AMKLIEAVSIWDNGTVQEAKILNAYAINVTLGTSATFYYQLFAETAELAVGTQLAQGNLTMTGEAYTQWEMDDYAWDWVAE
Ga0181344_10026595F014605N/AMKVNLAVAVKDIEGNEIPNERGEQMLLSKLVGNALFTAEDKEDPIRVYELAKKIYCSEGEIEMTKSDADLIKEKVKAKGFTVLILAPLYEALSEK
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