NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1000110

Scaffold Ga0181344_1000110


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1000110 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33878
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (83.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004517Metagenome / Metatranscriptome434Y
F011648Metagenome / Metatranscriptome288Y
F085148Metagenome111Y
F086791Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100011026F086791AGGAGMSNYLFSMYCGDTYLDIYGYVDKDEPSLGHVGGIEIEDVCTCDTKTSVWEMIHALNFDKFNEQAQMAWSERNDR
Ga0181344_100011030F011648AGGAMSEQEQDFNSFQQHLERIFKDLDDGVFITAAEIADLRYACGLPAIRNSHVNPVLRDVINDFSNIFRNAK
Ga0181344_100011036F085148AGCAGMNSFKQQIEYLAHAYIAIAKRERSWNRVKELIERNQNTADAVKIRIKEIIKK
Ga0181344_100011046F004517GAGMKHMSRKYKPEDAMLKPHKETTLEKQQRERLERRAAIANKLKDLDKEVK
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