NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1000021

Scaffold Ga0181344_1000021


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1000021 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)83650
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (37.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002333Metagenome569Y
F022857Metagenome212Y
F044462Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100002113F022857N/AMDPVIVPRLTVSFAVDLEVEYDSFGGRTAQDIAIALQDELDDLLFETSPAVKGVFTSITAIDSND
Ga0181344_100002121F002333N/AMSNQTQQELNAAQAAIYTRTNIRRAYQDFDDTEIAGIYLRGDHCIVVHRDGSEQAYDRQLIKSAFQQYTHRLKDFFAYLGPSYRGPSVWHNNAYVMFKGWNYSHALGHLTANAKLQQHWADKFIHLSDPAKVVALLQNEQTDLGHLVAPDGLRSPNRPIDLESELEENASGIQASTPEPYCSCGSFQRQLLNVSLFQQEIEGFKPWCIHLTWFHKYRELLCKRTEVRNALPSGTPDKCVAWWYAPPVDHISEGKFVLLHTKSGAQAPLTHWRTYKPKEVFNQTHAWDLFFNMMEAGYVPFPGTALPQLQSAIKKK
Ga0181344_100002192F044462N/AMILCPKFVKRTLTYLATTLALQTVFIPGLKASSNWVGE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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