| Basic Information | |
|---|---|
| Taxon OID | 3300017736 Open in IMG/M |
| Scaffold ID | Ga0181365_1012185 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2143 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 108 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009265 | Metagenome / Metatranscriptome | 320 | Y |
| F009526 | Metagenome / Metatranscriptome | 316 | N |
| F009746 | Metagenome / Metatranscriptome | 313 | N |
| F036209 | Metagenome / Metatranscriptome | 170 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181365_10121852 | F036209 | GAGG | MADKVTVKMTPDSRDLRSLYKAFREMDEGAKKALKDDVTSISQWSAGEMQLSYNLNPLPSQAQKIAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFANGGRRFPDRSRPQGRGNEGYGIFVTLKKIQPELTRRWKDAVNRQVIEKWDDNNG |
| Ga0181365_10121853 | F009265 | AGG | MQYTVTTRQGNNYIVSDDNAWLWIEIERELGYTVSQAAEKMSQGSLDVITCMLYKAAKASGHTKLPSQQAWVTNEFETFEVVEESPKENSLTDSSE |
| Ga0181365_10121854 | F009526 | AGGA | MPATYITGRNLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDRTATLNVELYLDDTSSAGIISALWDAAKNSPDTSLSFSFDVNGDTFTGNLFPVFPTVGGAATDVLTTSLSFVVEDGSVARA |
| Ga0181365_10121855 | F009746 | GAGG | LGNLATYRTTLANTLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITVIVNAADNQAALANLETLIFSVTDLLANNISFLGGWSQPTVQQIGNADMLISQLNVEMVTTN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |