NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181417_1040314

Scaffold Ga0181417_1040314


Overview

Basic Information
Taxon OID3300017730 Open in IMG/M
Scaffold IDGa0181417_1040314 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1147
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018266Metagenome / Metatranscriptome236N
F038858Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0181417_10403141F018266GAGGMFRVILENKFRENPINLSRAVKLLYNQDFTGSIRLENLLWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKLSIRVVTIPSGSDKRELLVLNKIYGGNNG
Ga0181417_10403144F038858GGAMKRIEKVGEQLVKAFTLPIRVCVGIYKCIEKATPDTLEMPFEIKRKEENNGDSK

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