NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181417_1027554

Scaffold Ga0181417_1027554


Overview

Basic Information
Taxon OID3300017730 Open in IMG/M
Scaffold IDGa0181417_1027554 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1410
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039132Metagenome164Y
F047679Metagenome149N
F082690Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0181417_10275541F039132N/ANMRGHKGAGLYLTSESGLLLEGMRKVESFARLKCRQLYQQLFDVKGVSDDGYDDLRWQIVANGEEFYNNITLEKAQSMIDNNEYKECFAYAFQQIDNVEKLIKEERALDERERQLDHIEECRQGKHGSFKQSLVSAFDKADNSNKMRLSLGFQDLFGEIV
Ga0181417_10275544F082690N/AMSKECVMCGGDAGEYGNNPAPLHNEGVCCDDCNMEVVMTRVLINRVGRNMKQ
Ga0181417_10275545F047679GGAMTNLETSTAPIVADQEGDHYFMVGELTYYLNEFMKSESEFDAVAGIANTGGIGIKVDEANEEVEYTLFTISS
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