NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181417_1008538

Scaffold Ga0181417_1008538


Overview

Basic Information
Taxon OID3300017730 Open in IMG/M
Scaffold IDGa0181417_1008538 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2683
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → uncultured Mediterranean phage uvDeep-CGR2-KM22-C255(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029471Metagenome / Metatranscriptome188N
F056671Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0181417_10085386F056671N/AMDVIMRIMMTLTGLILGMLGMITAIHSDHQVLGILISFAGVMTMLTGLPNNQKDR
Ga0181417_10085388F029471AGGAGMLSSELNQQDYSDSRLDDMQDVLDCVDMKAGIKTFFDTVISPFADHQDWTMLAGWNANSIIGVFERHHEQCIKSLDKTRDLMKNAMREDVGNEITKLNVDKLIFRRDAQEVNIKRAEAILNEFHICYEVTFGKKFMPQSKTAGVKDVTKEMKEYNVARLKEALGQK
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