Scaffold Ga0181401_1020680

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0181401_1020680

Scaffold Ga0181401_1020680

Overview

Basic Information
Taxon OID	3300017727 Open in IMG/M
Scaffold ID	Ga0181401_1020680 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1965
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F003365	Metagenome / Metatranscriptome	491	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181401_10206801	F002495	AGGAGG	MSTNGNAKQKDWVLFPYKADDERAINISFSGNVVLDNGNKGTILGVKGVSKDGKSKFVRVFAQVGVVFKGDDKFTGEMNYPDAGGQKGLIGWLNDEGTILSGYKNEPRPKQAKTQSKEIP
Ga0181401_10206804	F003365	N/A	MSIKNTMKTIGKEWAKKNEGGMFTADHLSPSQLNKNIDQWFNDYCVLTAEQRKALMSNLKMDFGGYVGQALQDIIVYDLTIDEVMKGKKXPIE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.