| Basic Information | |
|---|---|
| Taxon OID | 3300017722 Open in IMG/M |
| Scaffold ID | Ga0181347_1027924 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1764 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037719 | Metagenome / Metatranscriptome | 167 | Y |
| F052598 | Metagenome | 142 | N |
| F054041 | Metagenome / Metatranscriptome | 140 | Y |
| F099316 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181347_10279242 | F037719 | AGGAG | MNEELKALVLQAGAPVEVMDQMWFNIFCQQFADLLITIMETE |
| Ga0181347_10279244 | F099316 | GAGG | MWRIRKTGEEGGYIVRSKELAEQLLDQWARQGAIWEMVEIAELGDPMEQ |
| Ga0181347_10279246 | F052598 | GAG | MILIFKLTVTDEFHSDFVYETNDKEEVLDRVALWLSQLDNTPIYNLNIEVN |
| Ga0181347_10279248 | F054041 | AGGA | MTTIFTCGHKAKDDEDGFTISTKAYTRENNRAVDYRTVCNNCYQVYEMEDLILLGEADVEKWLEGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |