NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181347_1006606

Scaffold Ga0181347_1006606


Overview

Basic Information
Taxon OID3300017722 Open in IMG/M
Scaffold IDGa0181347_1006606 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3820
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004232Metagenome / Metatranscriptome447Y
F013755Metagenome / Metatranscriptome268Y
F076009Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0181347_10066061F013755GGAGGVSETPISDSTPHNVADLGMLCRRLERLAAVRLGYITQLETENDSMRADLLLWREDKWRA
Ga0181347_10066065F004232N/AMNKTIVACDPGVNGGFAIHTKDGILLFAMPESLPDMAQLLSGFKVADSHLWVEKVPKFVSSLTSSASMATLHENYGIIQGLAYSQGYALHRVEPKVWQEPLGLGGKRSCATGPEWKRKLKSKAQELYPQLDVTLKNCDALLILHYALGGGR
Ga0181347_10066069F076009N/AQALISATEANIADGDEFDFSIGGAFLRFLQGFVGLSLVIVIEEEKYIDKHGAEQTTFRVKRMKKVPVDLDYI
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