NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181390_1006387

Scaffold Ga0181390_1006387


Overview

Basic Information
Taxon OID3300017719 Open in IMG/M
Scaffold IDGa0181390_1006387 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4354
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017994Metagenome237Y
F037817Metagenome167Y
F080032Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0181390_100638712F037817N/AMKMFSTVLIPEAKTGMEYVVTAEISSVNPEMDPRPGPYYFIQEVKKGTVKKIKKANFKQGKFYNCSDVILT
Ga0181390_10063873F017994N/AMKIEEFIMHKNRWLNGWSKHMKLGDINFKTYMRMKGMTEEEFAILEAKAAK
Ga0181390_10063877F080032N/AMKEKKEQKVKLKYDFPSQLCCEVYVPNLEDWFRITPKEFRSWCGQRRMLHLESSIKQNTNVKAEYRDYDGPTYLYDSNKKINPSNYTQNKVAFLHDEDPRKFTPRNGSERDYIHKIKAEA
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