NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181350_1047876

Scaffold Ga0181350_1047876


Overview

Basic Information
Taxon OID3300017716 Open in IMG/M
Scaffold IDGa0181350_1047876 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1143
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)36
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002259Metagenome / Metatranscriptome577Y
F006697Metagenome / Metatranscriptome366Y
F025017Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0181350_10478761F025017N/AMATNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFE
Ga0181350_10478762F006697N/AMANQVSKLAYVDSKLGVSLPGQQTTRVIYDSINAAAGQTFFQFFTNFAGKTEFQTNLTTNKLDSAESMVIKSVQIIMNSGTSNLADHLNLNITVGNQVVLKDFDPSFNCSSRGLSFDRLHSGFNSTTNLEVRLLTEIVIPPQVNFKAELQLGNALIALNDDVTIVLKGYGRIFSAGNSF
Ga0181350_10478763F002259N/AGYDSQTTAALTHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPQDAAGAIYGGLNFSSVKFDLVIGNKTVIKDATVEFGGEQAFYNDGTLGSSVIDLEGVGILIPPQVEYYVVAKAFDSVARTATSLRLGCYLFGTGVLLNFNTTI
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