NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1036764

Scaffold Ga0181369_1036764


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1036764 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1134
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001205Metagenome / Metatranscriptome748Y
F029152Metagenome / Metatranscriptome189Y
F055651Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0181369_10367641F029152N/ATDLAAVAAKAQRDSRIDTANFDRFTVEQQITKSCEQLGITTASRTITALSGTLLRNMNQHDRDEIARQLDSNESADTLS
Ga0181369_10367642F001205AGCAGMFKDVIGDWPTHEKFILTSCDSKYFDQYFPRFYKTYSKHWELPIHVHIIDPTQTARYRLDRLPVSYTHCTTDKSILKFTYSYETYYQAQRFILLGHNLLGNQSVIVADVDSYALRGPTDDQRKLVSSDMGFTEYNGRLMATFCNFHHSRREQAKQSAVKMQQLIEQTDTIGVDQLVIKETFNSLPYNNFKHEEWIRHFDNRTDIDAEKHNQCLIYHEKGTRGKLKTVETTWTDIEL
Ga0181369_10367643F055651GGAGMDRYRVIAKFAKQNNWKQGLELGVWVGVTTFYMMRETGVKMYCVDSWEEQPDNPEYDWQFNKKPRWKD
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