| Basic Information | |
|---|---|
| Taxon OID | 3300017708 Open in IMG/M |
| Scaffold ID | Ga0181369_1021971 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1547 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Subarctic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -20.099 | Long. (o) | -70.892 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026158 | Metagenome | 199 | Y |
| F047368 | Metagenome | 150 | N |
| F052258 | Metagenome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181369_10219711 | F052258 | N/A | QTMKKTKQTISEHKLVNSERETEAAMILFACILGGAMIILLSIAIG |
| Ga0181369_10219712 | F026158 | GAGG | MLQFSSTSESKASAVQCIEGFRDKMEMLMKAGDILDHCKRGRSTEKEAREARERSLKIWRETGCPISHAAELGGANRTNFHKWLIREGHHTPKSK |
| Ga0181369_10219713 | F047368 | AGG | MPNKCGAIKHAHTAEEALKHLAVGNKSKGYKLKRSGVSIMVLNIEEIKDT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |