| Basic Information | |
|---|---|
| Taxon OID | 3300017708 Open in IMG/M |
| Scaffold ID | Ga0181369_1006712 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3024 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Subarctic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -20.099 | Long. (o) | -70.892 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005218 | Metagenome / Metatranscriptome | 408 | Y |
| F011860 | Metagenome / Metatranscriptome | 286 | Y |
| F015999 | Metagenome / Metatranscriptome | 250 | Y |
| F085545 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181369_10067121 | F005218 | N/A | SMANDKFYGYKPKKEENQLGWQNNSMGQGTRLDRVNPYEFKKGMYVELGKLGTSLRESEADQREKATETVLKNLKDVPAYYSCMEHYEVITRNMDRKPSFKSFLKEMGDHSMKEVKEKFTVDKMKEIKLKESVRAEVKNILKELFKIK |
| Ga0181369_10067123 | F085545 | N/A | MVNIDALLSEWAYRCKKGYPDLDSPSDLKILKTILKEQEISLPEFQEQVINEQEGKEISIKDITDILNQIKDDQKALDKIYKFIINRPGEKGFFGVATDSNVTDKTVDTSNAPQVIFDLLSNSGDLKKYIDLEKPGFSEIGKEGNFLDFFEGKSGMSKDVLTKMFNFSGKESGRGVGKGEVAMALLFKDVKMAVAGGGDLNWGGKSLEVKGSSARLGGRDRKFEGFERTALGQLATKYDKSDAQFRTLIPNLADEEGLDKKELLDAVIDFESKAHPKGDAKKYFTEGILDNPIEIRKAFTKNLIRHYSTSKNIDHFIWWNSNNKFGKYISFTPDEADELVDKGLLRTNNAAVYQLDPSISKP |
| Ga0181369_10067124 | F015999 | N/A | MSLNSFFDSIDTDAQFDVWKKTITQKLVHLKNTIPIENRDELNYVGETLEFINSLNLLNSNFLAHHPNMDNKKTLTKRLKTCNSFYRKFGNL |
| Ga0181369_10067125 | F011860 | N/A | MARYQQQMNIALERLDQGLARVHSMVKRGKNTEAIHFMENDLKELYEDLQNIINIEPGGEGTQSRVGFLGGR |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |