NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1011699

Scaffold Ga0181377_1011699


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1011699 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2084
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015092Metagenome / Metatranscriptome257Y
F030088Metagenome186Y
F039132Metagenome164Y
F082690Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0181377_10116991F015092N/ASKLLTKLFIDWVNDEFDVELLEASKVMIQNRQEQVNYLAAKANQPATIGFKY
Ga0181377_10116992F039132AGGMNKSMESVMWQVIEDMNFNERGHKGAGLYLTNKSGLSLDGMRKVESFARRKCGELYKQLFDVKGVSDDSYDDLRWQIVANGEEFYNNITLEKAQSMIDDNEFNESFGYAFHKIDDLEKLIEEETAINERDLQLAHLEECRQGKHGSFKQVLVSAFDKADNSNKMKLSLGFQNMFGDIV
Ga0181377_10116995F082690N/AMSKECVMCGGDAGEYGNNPAPLHNEGVCCDSCNMEVVMTRVMINRIGRNMEQ
Ga0181377_10116997F030088N/AMGFKLNIVTKTKMSAKEMSRTLITLNQSEVFKMGRKMYVPFSAVSVVFNSKGATRKFDKDLDSITHPTRGKLFCLPSNVEQFIKVV
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