NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181339_1004893

Scaffold Ga0181339_1004893


Overview

Basic Information
Taxon OID3300017700 Open in IMG/M
Scaffold IDGa0181339_1004893 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1721
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)108
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002332Metagenome / Metatranscriptome569Y
F041153Metagenome / Metatranscriptome160Y
F079953Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0181339_10048931F041153N/AMSIVFQASDHSYKSINDSDKINWISVTTLVSHFKKPFDTKAIAAKVTKNKKSKWFGIDPIAIQAIWNSESDRAMTLGTFYHNQRESDICGLASMEREGIVVPI
Ga0181339_10048932F079953N/AMIPKKANSLYKEITKEFDVSQDLVESLIDDYYKTLRKRMSSLNDLRINVDGLGHFVIKIQKVKKAIPHCKKVLENHDTSTFGAYHNKKSIEEKLELLNSIHLKAEEELLKRKTFKDEKYIKINLAKSKTDSGGTDE
Ga0181339_10048933F002332GAGGMALVNQVQKRVKMPKWDVVKFQILTHCYLNRITMSESDLNCLTLLSFNQPIELTNFCLDASAEEGWIFKSPQTVRNSINKAEKNKLVLKDSSNKKLIILNPDLKIQTNGVILLDYKFLGNDTKESK
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