NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180120_10037992

Scaffold Ga0180120_10037992


Overview

Basic Information
Taxon OID3300017697 Open in IMG/M
Scaffold IDGa0180120_10037992 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2199
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1043Long. (o)-76.1811Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001894Metagenome / Metatranscriptome621Y
F027318Metagenome / Metatranscriptome195Y
F039342Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0180120_100379921F001894N/AMPSMSESAKIAKIHYRYQVGENRERQDKYAKRKLGRLGYELDSKNTNKDVLTATRANNVHINYTGTNVNNPRDLLSDVALGVGVQRSNKDFNDRRKKTRDIMRQYGDDKDYSLGGHSLGASHALNNMSQSKSIRDRVKSVHVFNPGYTKPFHESIKVDKETKRQLDKKVNIHRVKSDIVSAHANKETAFGNVFEYKADKDADLFDKHSLDTFTNVDM
Ga0180120_100379923F027318N/AMSMHQGTMKLTPQQANVIPAGKYIYTDETFLVKQPIASEEAFARQGKALVPAYFSFQHGGQEFQPVYQPAPSMTMNYGTYIYNIVDGFQ
Ga0180120_100379924F039342N/AMSYSLDTPYSSQVVFMNSENSVFKQIDGVGNYTYSFNTPIQLPTNCEMLISITDASFPNVIPNVTSSNNKISFYIPTFSKYFTITLQEADGTIDKV
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