NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186300_100395

Scaffold Ga0186300_100395


Overview

Basic Information
Taxon OID3300017177 Open in IMG/M
Scaffold IDGa0186300_100395 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 15 C, 32 psu salinity and 117 ?mol photons light - Pelagococcus subviridis CCMP 1429 (MMETSP0883)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3577
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9166Long. (o)-145.1166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026197Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0186300_1003953F026197GGAMLCERGRCDAHGLKYERVMPSQPGYQWDDAGGYCGSWATQRAALTVGAWISQQQVRDHASDCGGHDSEILSCNIEEALTGLKLEFNAWDYKNESTPQTDAYAAWLKAQLAGGHAVAWMIMWSGQDYPIYDLTPPDGMYGHVEPVIGVASNHPLNDTTVYDDDVVLHYTDGGVNTVQRGLTTLAGEWAGPGEKADCGDYQYCVGNPYGFGWAIKGYAARDGAVAASLRVAPFLSEPDTRSGEAPESLRGTVTATGLTPGAAYDVYRWDDVENVGTFDDAHKSATFTASKDAHVYVDDKSIPSDGTTYYKVVLASA
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