NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186686_104899

Scaffold Ga0186686_104899


Overview

Basic Information
Taxon OID3300016997 Open in IMG/M
Scaffold IDGa0186686_104899 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal eukaryotic communities from Ionian Sea in autoclaved artificial seawater, 19 C, 33 psu salinity and 338 ?mol photons light - Litonotus pictus P1 (MMETSP0209)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1728
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameIonian Sea
CoordinatesLat. (o)40.3Long. (o)17.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018657Metagenome / Metatranscriptome233N

Sequences

Protein IDFamilyRBSSequence
Ga0186686_1048991F018657N/AAKKTDINDDFIRNLDKKEKYVWLCNDCKKFMYTKEYSKDHKRCWADLVENMYDDIKKINEDNLESVNGMSAEFKEEVDFMTKKYQYIEENNPFEMNLKLVNKIYDNIVDLVNKKREEALEKMTALRDNYMKNIQQNINKIQNMIDKSDEVGTKLKKELGKMNKLNSVEFCKELLINNASSDLVDDCSDIATFQRQEFTRIKQSFIDTNTVVFNDSNAVIDQAKNLREFLIEKITNFYTNYAKYQSKYAFTVVMNMKEFIVYLIDSNKVTKVSYVNDFVIPCYARWVDISGDKLILTGGEKDYIESLNTCYMFKFRKFEGSDEGFSAKVFHKASMNYRRRAHSLIYFNDFIYAVSGVDKLEMIKKCEKYDIFNDKWIEIPEINFHRQNAALALHNQRYLYAFCGYDGFRNVDNFERLDFLNESAGWEMFDLKSVAKDIDVVDIRKNRMGVINLDFDRMLIFGGERNNKEYKDAYIYEFYENKFYQFTDLVRTSNFIMSPVYYSGKYIVFDFLNNIHELNLENLQFEYHIFHKEGENVNL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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