NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186391_104703

Scaffold Ga0186391_104703


Overview

Basic Information
Taxon OID3300016964 Open in IMG/M
Scaffold IDGa0186391_104703 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Mediterranean Sea in K medium, 22 C, 35 psu salinity and 348 ?mol photons light - Bolidomonas sp. RCC2347 (MMETSP1320)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1191
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)35.66666667Long. (o)14.1Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026197Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0186391_1047031F026197N/APHLSPPPLSLMVRFALATALLAISAPGLTSALLKMPPHVSEASICEGGACEGDAMPYERVSASQPGYQWNDAGGYCGSWATQRAVLSKGAWISQQQVRDHTSPCGGNDNEILSCNIDEAWTNLKLDYDGFDFEGEATPQTDAYKSWLKGHLVEGNAVAWMILWSGQTYPIYDLTPPAGMYGHVEPVIGIQSNHPLNDTKVYDDDVILHYTDGGVNTVHRTMSTLEGEWAGPGEKADCGDYSYCIGNPWGYGWAVKGFSDKVDAAPASLRVDPWLSEPDTRSGEDPNAMQGTLTATELEVGETYDIYRWDSVKDALTYTGDFVKATFKATEDTYKYVDDESFQSDSATYYRVVKK
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