| Basic Information | |
|---|---|
| Taxon OID | 3300016902 Open in IMG/M |
| Scaffold ID | Ga0186673_108357 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in 0.2u filtered seawater with ES enrichments, GLUTAMATE, 15 C, 33 psu salinity and 98 ?mol photons light - Pseudo-nitzschia australis 10249 10 AB (MMETSP0142_2) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | National Center for Genome Resources |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1477 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 36.60369 | Long. (o) | -121.88927 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F080841 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0186673_1083572 | F080841 | N/A | MCKISFSSLIAAVFFVIGNALTIAYYVKEFQRSHFNYLEYTSLDPGYIQVEWGFRVMNRPLYLSAGIMNVIAWFFLMFPIIHLSWILSQGGTKWIGLHIAIGVLILTGSLTEWISHILYIGASLTSELMAREFNLDNWITSNSEDEIGWRALEMTHIVTYGFISAIGAIEWLILSVVMVLIHISVKRWRRNVDATTFGACWNALGLFVALMCILEFTAEVLRLEGFRTFAKIAFWYSSVNRLILIPTWLILLGARLPYASLKLNQQSHMREQESPLVSE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |