NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182052_1390319

Scaffold Ga0182052_1390319


Overview

Basic Information
Taxon OID3300016742 Open in IMG/M
Scaffold IDGa0182052_1390319 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011511BT metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)658
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005590Metagenome / Metatranscriptome395N
F005843Metagenome / Metatranscriptome388Y
F009460Metagenome / Metatranscriptome317N

Sequences

Protein IDFamilyRBSSequence
Ga0182052_13903191F005843N/AFVIFSSADECKEFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPQPRPTQESNNG
Ga0182052_13903192F009460AGGAGMAKWDLSKLENSASVGAYIDEDNTTPTRPTPLMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCEMLEKWL
Ga0182052_13903193F005590GGAGVTESLTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIRRCLSRHGELSVGDLCSMIEQDAVHIDIGLKTMRERRTIV
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