NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182036_11463536

Scaffold Ga0182036_11463536


Overview

Basic Information
Taxon OID3300016270 Open in IMG/M
Scaffold IDGa0182036_11463536 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)573
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059729Metagenome / Metatranscriptome133Y
F085445Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0182036_114635361F059729N/ANAGSYTCSNGTLLAESVTALSFAYFDSANNPVPNPPTGPFNLDAQGLGAAPSFVNVAQRSIVRRIVIMVTARENVPGQGFQTYTLTSDVRLRNP
Ga0182036_114635362F085445GGAGGMRSVWRNWTDERGIASVMAIFIMVLMLVSGIFLVRMSSTEGDIAYGTMWAEGSFFAADAAINVGADTVGPNGGPCTTTASLPNFSYSVAAG

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