NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167652_1000353

Scaffold Ga0167652_1000353


Overview

Basic Information
Taxon OID3300015164 Open in IMG/M
Scaffold IDGa0167652_1000353 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13077
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.900879Long. (o)18.43474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003735Metagenome / Metatranscriptome471Y
F030515Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0167652_100035313F030515N/AMTPDITPQTPQTPKHLAMLRILYGACSAALDAFRAADNPVDQQLVADLESMVTRTYLEIERLTAQLAKSA*
Ga0167652_10003532F003735N/AVGAAREVEPAVALRVRTQEEPGIKVRVNFGVFAGRTVTPAEIDDLATRVSNLVPAFAIVAEERHEFGGAVEASVHQVVVEVPCEHAGDEADVLAERIVLEANGWALECIEARRAEI*

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