NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181338_1017453

Scaffold Ga0181338_1017453


Overview

Basic Information
Taxon OID3300015050 Open in IMG/M
Scaffold IDGa0181338_1017453 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1136
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014726Metagenome / Metatranscriptome260Y
F068593Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0181338_10174531F068593AGGAMTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLSAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQARQGFTTGTNFTYRGYTALTNGAMEQLQTVLNLGVLEISFAQKLYYQIARPFVACPSGFGIDVQSLA
Ga0181338_10174532F014726N/AYPTAGASELNFFGQVAGQTGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIASNDVDGFTRANQATLDTRALASDFLGGFVQAGVLRFSVGARPFATIIKPFQYAPPPGSPLDYDNTYVNQISAAPVPAAGAGQVVGVPWITQTKMRSNVYFVDPNILIEAEQQFNVSLQFPSGIVPVLATNVVNDSTNPLKVGVILDGLLLRPVQ*
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