NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181338_1010962

Scaffold Ga0181338_1010962


Overview

Basic Information
Taxon OID3300015050 Open in IMG/M
Scaffold IDGa0181338_1010962 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1483
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002259Metagenome / Metatranscriptome577Y
F019128Metagenome / Metatranscriptome231Y
F025017Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0181338_10109621F025017N/AMATNMNISYRQGIRNKGFQVTVPTTGATQTLSLSG
Ga0181338_10109623F002259N/AMGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAALTHTFFKGAAQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPSAADGIAYGGLAGNSVKFDLVIGNKTVIKDATVEFGGEQAFYNDGTVASSVIDLEGVGILIPPQVEYYVIAKPFDTVNRGAGATRLGCYLFGTGALLNFNTTI*
Ga0181338_10109624F019128N/ALATSLFLKQPEIAAGMAGYAGAKIGQSLVGADSVVGKMLAEDNSFNVSPSMYLQGDMAGEGIYASNYTLSGYDIPGL*
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