NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182030_10054044

Scaffold Ga0182030_10054044


Overview

Basic Information
Taxon OID3300014838 Open in IMG/M
Scaffold IDGa0182030_10054044 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6315
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000065Metagenome / Metatranscriptome2788Y
F001851Metagenome / Metatranscriptome626Y
F087602Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0182030_1005404410F000065AGGAMSHLTNKPVLKLPRSLQPPLAHPGATPDSDRAKKPSLVDPVSTGQDLNPGDRVEGLGDFGKSTGEFGTVVRTNEDDAIVKWDDDGRSRLHQPWLKKV*
Ga0182030_100540444F087602AGGAMPFAAILREVEQLNNVSTRLAGLADQHLPISEALLTIAGTVRDTATVLAVLVVAKGPKPI
Ga0182030_100540445F001851AGAAGGMNVITVFFGLLIGLLTIRLLYRMRNLKPQVAAYGTQRMCPSCGLITSRLKSHCLECGKLLPAVT*
Ga0182030_100540446F000042GAGGMTNTKFVVKVNRGGTRAPEYVQRVDPTPIHMTTNRKLALVMGKFVAEDAVKFLQTSRRSPELVSVQVGA*
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