NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182015_10001657

Scaffold Ga0182015_10001657


Overview

Basic Information
Taxon OID3300014495 Open in IMG/M
Scaffold IDGa0182015_10001657 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28821
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (83.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F001742Metagenome / Metatranscriptome643Y
F003000Metagenome / Metatranscriptome514Y

Sequences

Protein IDFamilyRBSSequence
Ga0182015_1000165712F001742AGGAGMPEATPGNRGRNRQKVPRIGSKEAAQIFEQCEHLLDSSSVFVENLRQMGFARFLSPLNEQILELAVQPDAWGERTRARLISYVFAGLRGLPAESASVEEIVQVSNVVVPCLLLELGRRRQHIEIEFPDNPCDPGARFEFRVAQSRPVYSIDREQLVRLVAEAGAELVGLCYFGDQQSRERIESQLAPGSTSNS*
Ga0182015_1000165723F003000N/AMKADTQLGEMHDRLTDFHRQNPREGLGDALLIRLADPLKPQDEQGRFRVNPILMLLASVLALVFGAFLFFSVVRS*
Ga0182015_100016578F000208AGCAGMVMRIRVTTKANLFEERKQQHIERGYRIEDEQPIPVNGLCSFIAVSEIPDSGGIGTLVAEALNGMAR*
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