NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182014_10091158

Scaffold Ga0182014_10091158


Overview

Basic Information
Taxon OID3300014491 Open in IMG/M
Scaffold IDGa0182014_10091158 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1869
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046997Metagenome150N
F055381Metagenome138N
F058854Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0182014_100911581F046997N/ATVFTTFAYRTLSLIGCSLALGAAASPVTVGDVRTERDSIPRALARDKAEAIAIFRASQQPLLWLRAMSGISCIENKLQSTPTNAAAETSALLLTLGDNKLTLHADVLKKSYTACQPTNGLPLYVDRNRRRAPETYVDPEILKGGVNILTLKGTNQVPACLSGEALENYLRLRCDQKLQPGDYWRELHARKLDDEQLARLRYYDYLDTHVALRSVPVYQCTEIRSRNH*
Ga0182014_100911582F058854N/ALNARWQGSTWQANRLELSGLTYQGALFPLITQGPGAFSLPSGAFVLRLHVLPLNTRDNEPMLVLWGRIADPHDKPLARLFLRKGRLVWVCPIDANGDSLFDAPKDVELETRELTPGLWATVDVLINPLAYQQTFGWNLEMNHPQDPAKPPGKPLHLARQLTAADWSLQRIEVPRFHAAWLGQMELLPADTPPAQLRPNILRQ*
Ga0182014_100911583F055381N/AMKFLLLFMLPALAATGSSIRDVCLPPCYDQAAFQRVELELKDLSANYVQLDHPCTLFCTNQIVMVSNGIARATLLIDLKKTPATFPIIVMAPDANGRMTPRQRLICHLSPVPLPIKVEVRDDTFTVTNLTEEPFDLEHAENLTITSRDDRHIAGTLSGSGRLKLKGRAEIRLNRNSGPGGPR*
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