NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182014_10001359

Scaffold Ga0182014_10001359


Overview

Basic Information
Taxon OID3300014491 Open in IMG/M
Scaffold IDGa0182014_10001359 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32771
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (59.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004293Metagenome / Metatranscriptome445Y
F004527Metagenome / Metatranscriptome434Y
F007051Metagenome / Metatranscriptome359Y
F015853Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0182014_1000135913F015853N/AMSGNSHSGESARGCFRFLGGHMGDRAYAQVLCRGKDVAAFEDVGFTEQEYWKGLPEGVSFLVDEEANYGNSSSLRELAERGYVFIAQHDAGGDYDAARLVSDGKTFREVDAMVHEPRPCVAVDANGFVDKKQLQAVRKYWRAVARVKQKLGFAQEEM*
Ga0182014_1000135919F007051AGGAGMQQKTITVVIDQNGDSSVDLEGFAGQGCDKVLKDFQEDDHAKVQRKKAAFYSTAVDSRDQHLKSGQ*
Ga0182014_100013593F004293N/AMERFKNTGLVLCLFVVLLVIFSSYIRANEVGTFFGALAGTPLLVHVFNRVAPSRSKPGSERTTTALVADAEPMPRPHEQVVVLRMEGPAGRA*
Ga0182014_100013598F004527AGGAGGMQQPRTICQQELFQEPSAAPAVRLPLDVQQQLRQALVLWMRALAKMIREEEDDDEQDHR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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