NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182018_10049951

Scaffold Ga0182018_10049951


Overview

Basic Information
Taxon OID3300014489 Open in IMG/M
Scaffold IDGa0182018_10049951 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2561
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001137Metagenome / Metatranscriptome767Y
F008704Metagenome / Metatranscriptome329Y

Sequences

Protein IDFamilyRBSSequence
Ga0182018_100499511F001137N/ARRVEDCLREVAQLRERNQQLEGEMSKAARRGKLEEISFEEEARTWVGIAVSEKLPKNGDYVLAYRDPSGAPLEPCILVDNKDKATVTEGDIRKLVRDVKERRSMVGVIVAREESQLRQLDRERRWGQEDGIWVLRTTRHWLPRDLEVLKPVFERMRTEGPDFLQRNSSLAEEVRRTFIDLDEIEKELKKAAKAIDAVSDLTAKYRSRLQALCDTAVSPKVAPKAERNGGIPQTLGA*
Ga0182018_100499513F008704AGGAGGMEFVHVFVLTSLTLDRSGDVKSKNVAVTFDLFEAEDHRNKGVEYDYDTFVVPCDWRENAAQSELISTMREFRAMVREMQEAALRTG*
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