Basic Information | |
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Taxon OID | 3300014489 Open in IMG/M |
Scaffold ID | Ga0182018_10000541 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 48460 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (82.93%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000540 | Metagenome / Metatranscriptome | 1043 | Y |
F000677 | Metagenome / Metatranscriptome | 940 | Y |
F001133 | Metagenome / Metatranscriptome | 767 | Y |
F001303 | Metagenome / Metatranscriptome | 727 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182018_1000054123 | F001303 | GGA | MNRENRESMEEIHLRILRITEDLRVIQRELNCAAMQAPTDPELMEALADPPEMESIRLLKSTLDQMRHFLWFYMQVVTSDSEMGEKFRQTLRQDAPPQVPEMEQFQSAADSIMLRYLADNKFRKPN* |
Ga0182018_1000054129 | F000677 | GGA | MKYFLLILLLSAGMQAQNLTVNKFALPDVPSQHRFWTVEKQVNVGILAGLVAADAVTTQIGLNEGLREANPIMRPFVTRGAAGEAAGSALGFGAAVGVVYLLHRTHHYKAERIVMRTMVAGESGFVANNIVEIR* |
Ga0182018_100005413 | F001133 | GGA | MWIEKLTAGVLELDTPIGPRYVQPNLAQRAYLMWTFRNFFSLPQQVLRPWERRLIDRLWSENRFVSLSAGASDRPVIGRIERRAPPPAEVMPTRKPPIRDSMSGSKAASA* |
Ga0182018_1000054140 | F000540 | GAG | MAKKKTASPVPKLTETEQDLLSHIQDGYQLETDSLGANPILRRLKDDEKIRPLSANRNTIKAMEQRGLISPGKGRDPLTILWRLKRK* |
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