| Basic Information | |
|---|---|
| Taxon OID | 3300014489 Open in IMG/M |
| Scaffold ID | Ga0182018_10000501 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 50855 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011955 | Metagenome / Metatranscriptome | 285 | Y |
| F026629 | Metagenome | 197 | Y |
| F043510 | Metagenome / Metatranscriptome | 156 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182018_1000050113 | F011955 | AGGA | MNTETSIPQQISRADLVSLSENDVTEVACFIATQSGRIKNTVQEHLRWFLLENPARQANDPLGFGLRSADRFVGCILCSPQAFRFENQKIVFMGSSSFYVDESHRGHGGRVFLQYSRLANRWPLFGTSANPEAAALWKAAGASSIPYSDAELFGILHWPPVAEEFAHRRHPLLSRLAATSISNLAAVWRPLKFDGGTSDALQPLTSAEQVNDLVAENSCEKLTAMRDFAYIRWRYFSDRKERVEAFAFRSRQPDQEILVTVNQRSRGYRGQIKTLNVLDVYPEVSADEWLRIAGALTHRYRTAIDAVVLRNQNQKRQKLLCDKGFRRRVFDAPTGWYIDKVGLLPACDWYPVPADCDGLI |
| Ga0182018_1000050124 | F043510 | AGGCGG | MSEWREVRLPEDLCAAAENKFGSRFESLDDLVAFVLRELVHGDTVELGKAEQAAVEQRLKDLGYL* |
| Ga0182018_1000050131 | F026629 | N/A | MKILLLHSEDDPEKGPWSNLPWDHIVDLGLGGANSFARWSDKFQCPVTALGSLRNGFDVFRRVRDLLGLGSGKLLDEHGLDWWELMSILLHGELETLILLQRLLHTLGSEDEVYLSRPGLHANLLRGLLTPRVKVFPLRPVAQKSGLAYYVRVLRKLSAAQTVDVFWDKYDLGYQFRARLVSRRAPSQRPVVLVPTAYVNVSRTGLAYANTFQQENFLLVATRRSGWLKDLTKNMAAAWLSSYASLRDRSDENVEIAGRWRTLRKELEGTPEFEILSRLGYLDIFARWLRHGLEVRDAWRNVLDTEPVQAVLCCDDSNPYTRMPMLLAQARGLPNIACHHGALDGRYVFKRTYGDVVWAKGKMEEDYLVRRCGVPRERVEIAAPALPASWGASQVSNRQRSQPHLLFLSEVFEAGGGRAEDFYRDVVPPLADLALATGRQLIVKLHPGESTRERTNILARILSARQKGVMRIISGPLTEDLLAKAWFGITILSTVAVECAIRGIPCFLCKWLESWPYGYVEQFIRYGVGIGLDKPSDIAKISQYLQANPAGADVRENCWQPAAAGRLRQLLTTSCKAYTTVAR* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |