Scaffold Ga0075309_1019006

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075309_1019006

Scaffold Ga0075309_1019006

Overview

Basic Information
Taxon OID	3300014268 Open in IMG/M
Scaffold ID	Ga0075309_1019006 Open in IMG/M
Source Dataset Name	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1460
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location Name	USA: Antioch, San Francisco Bay, California
Coordinates	Lat. (^o)	38.052479	Long. (^o)	-121.7687	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012957	Metagenome	275	Y
F013621	Metagenome	269	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075309_10190062	F013621	AGGAG	MISQEEAKDFIRRYKEVVLDTPSGEVHVCGSKEVYEELIGQGKLAFSPNELIHLQKAAENGSLETIVKIKSSIPGARIKDIIPIEKKPEGTQKPS*
Ga0075309_10190063	F012957	GGA	MEKTFLQSLNLYRGKSALQISPSPELALVFVSLAPAIPGMENKMPDKNRKKYQWKKKLTASFNFDGALEVAAAAAALAQGREDLVSGSDGNLPSWYRDPTKTGRDGSAKTIAFYRAKDQPKTPRIRYFLGITENSKDKQGSKIGISLEYFDLFKIARVMEEAALAILGWRKQIERRGEANGYGIAKQQPAKDKSEVF*

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