NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181526_10109830

Scaffold Ga0181526_10109830


Overview

Basic Information
Taxon OID3300014200 Open in IMG/M
Scaffold IDGa0181526_10109830 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1763
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002319Metagenome / Metatranscriptome571Y
F032758Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0181526_101098302F002319GGAGMAPEVVSLQVTASIPIECDFWPEDDGWKGFCNSQSVTVRGSSFEDAKKNMATELQAHIERILREHPKRSTRRIA*
Ga0181526_101098303F032758N/ATTSAVADAIEDGVGAAKRVAKQGCDGVEEFLDDTTKRLQRHPTETVVASLAVGVAVGILIGWTMKRR*

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